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The past week has been rather people-full, most especially the last 2 days, and today will also be very people-full.

I tend to lose track of my internal monologue in the midst of too much people time, and then I get kind of frustrated/discouraged in the moments in-between because I feel like I should be doing something with that time, but I really can't.

Martha the cat also thought I should really get up early this morning. Eventually I'll have a cup of coffee and be on my way.

Today: National Learn to Row Day in the morning, then bike valet at Art on Lark in the afternoon. At least the forecast thunderstorms have moved into the later afternoon/early evening.

Roadside treasure [bicycling]

Jun. 4th, 2026 09:25 am
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The most treacherous road on my commute home includes a small uphill, then a slightly larger downhill, then the largest uphill climb of the ride. For around the last 6 months, there has been a tree branch that's about as thick around as my thumb that has been protruding out over the narrow shoulder right at eye level as I bike. Most of the time when it's light out, I see it and move further into the lane, but when it was dark in the winter sometimes I would forget about it and a flinch at the moment I'm trying to build speed for the uphill is dangerous, to say nothing of face lacerations from actual contact with the branch, or potentially winding up in the steep ditch.

Tuesday morning on my way biking to rowing practice, I glanced down at the gutter on a street next to our house, and noticed a nice pair of gardening hand pruners lying there, so I circled back and picked them up. My father would call items of this sort, "Roadside Treasure," and he is not wrong.

I figure if God sends people signs, no one could ever hope for a sign any more clear than that.

The hand pruners were deployed along multiple sections of that road's shoulder on the ride home. That road's shoulder is not more than 6 inches wide at its widest, and the road is curvy with 40 mph speed limits. People who drive and commute regularly on the road almost certainly know of me bicycling on it by now, but that doesn't make it pleasant when someone impatient wants to pass me and I need to be located where a motor vehicle's right wheel usually travels.

I'll get to test my handiwork on tonight's commute home.
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For the past year, I've had students helping me with two projects to characterize leafcutter ant worker size variation. The first project involved working with ants from a larger experiment where I fed colonies diets that contained different amounts of protein, carbohydrate, and phosphorus, and was partly motivated by a preliminary finding that the amount of cellulose in the food used to provision the leafcutter fungus can cause colonies to produce smaller workers.

Anyway, the challenge with the first project is that my overall sample size is ~80 leafcutter ant colonies. If I want to characterize worker size variation, I need to measure some number of ants from each of those 80 colonies. For a fairly arbitrary reason, I've mostly been measuring ~96 worker ants per colony. Now, do the math: 80 x 96 is 7,680 ants. If it takes around 3 minutes to measure each ant (rough estimate), that's 384 hours of work, or 9.6 weeks of measuring ants for 40 hours a week, without any breaks.

For that reason, I put off attempting measurements until I had a crew of students in need of a straightforward research project. I had that crew last summer, for a month. In that time period, we got through around 50 out of the 80 colonies.

Yesterday, I finally managed to finish the first stage of the measurement process for the last 16 colonies, weighing the ants, one by one.

Here's my little corner weighing station:
Weighing ants

And a close-up of a small dish of the ants. Probably around 200 ants, in this case.
Weighing ants

Manipulating individual dried, brittle ants without damaging them requires some good fine-motor skills. After I weigh each ant, I've been putting her into her own well in a 96-well plate (to the right in the photo), which now helps you understand where the number 96 comes from.

But body weight is only half of the equation. The other half of the equation involves measuring each ant's head width - the general proxy for an ant's overall body size.

The materials needed to measure ant head widths are far more portable than the ant weighing station, however, so it's likely I'll be carting these ants along with me to Arizona this summer!

Oh - the second ant measurement project is a smaller one, and also nearly finished, hurrah!

(no subject)

Jun. 1st, 2026 10:56 pm
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[staff profile] denise posting in [site community profile] dw_maintenance
Quick note that post-by-email and comment-by-email is (sometimes?) failing silently without actually posting right now! I'm pretty sure this is related to last night's shenanigans and will be fixed once Mark can finish the full fix for it, which he's working on, but if you've posted or replied by email in the last 24 hours, fish it out of your sent folder to check if it posted!

EDIT: This should be fixed as of around 7AM EDT! We *believe* everything that was stuck in the plumbing has been sent along to your journal or the comment thread it was meant for; it's definitely not where it was stuck anymore, at least.

(no subject)

May. 31st, 2026 10:00 pm
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[staff profile] denise posting in [site community profile] dw_maintenance

Robby has managed to put in a temporary fix for the site errors and things failing to refresh or not showing up where they should! The permanent fix is going to need Mark's experience, and unfortunately -- seriously, this literally never fails -- Mark has been on an international flight all day, because of course he has. (Never. Fails. He and I are not allowed to both take vacation at once.)

The site will work just fine with the temporary fix in place, things just might be a little slow here and there. We'll keep you updated.

(no subject)

May. 31st, 2026 08:59 pm
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[staff profile] denise posting in [site community profile] dw_maintenance
We're aware of site traffic issues and are working to fix them for the people who are having problems! (The tactics the damn bot traffic uses are endlessly shifting, and they're really good at looking like real traffic, sigh.)
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Originally, this weekend would have been Yet Another Long Bike Ride, but since I decided to stop doing that, instead I had time to go boating! Yippee!

Small boat sail-camping is called "dinghy cruising," but I think if I'm rowing and not sailing to and from my destination, it's more like RowCamping for me. Plus, it would be really tricky to create some sort of boom tent setup aboard Petrichor to be a more proper dinghy cruiser.

In any case, I really wanted to do a RowCamping trial sometime this summer: see how far I could go in Petrichor, see what it's like to try and stow camping gear aboard, et cetera. I even managed to talk [personal profile] scrottie into joining me for the first leg, at least*.

We managed to get ourselves down to the boathouse in a fairly timely fashion, departing a bit after 9 am. The only real issue was a very strong northerly headwind - unusual for our stretch of the Hudson. Thanks to the extra rowing practice this past Monday, S and I were able to do a lot of tandem rowing as we worked our way north towards Troy. That was necessary; if just one of us was rowing, the boat could barely make forward progress.

You can see some evidence of our desperation to get out of the wind in this map of our journey:
May 30 Row to Troy

We tried crossing over to the opposite shore several times, to see if that side was more sheltered. The first time, we found some shelter and relief, but once we rounded the corner after the Menands Bridge, relief was hard to come by as the wind ripped right down along the river channel.

We were pleased to find that Petrichor dealt well with the swells and whitecaps. There was less than a centimeter of water in the bilge by the time we arrived at the public dock in Troy.

Row-camping gear test

I also learned a few lessons about trying to use a pee funnel while aboard a rowing vessel. Let's just say these lessons ultimately resulted in S deciding to purchase a pee bucket from the hardware store in Troy (with any luck, he will also use the bucket on an upcoming actual dinghy cruise).

Upon reaching Troy, we were thrilled to discovered that a beloved vegan burrito shop, Burrito Burrito, has reopened! It's now attached to/associated with a neighboring bar and music venue, in a quite lovely spot with quite lovely eclectic decor.

Burrito burrito lunch in Troy

It looks to me like the kitchen in the new space is more minuscule than in the prior location, but it's just so good to have a vegan burrito option again even if they can't deep-fry entire cauliflower heads anymore.

The farmer's market was pretty bustling. No 30-pound bags of carrots, but at least one place had decent bundles of rhubarb, and another stall had grapevines for sale.

That's the greenery tucked in behind me while I'm sitting in the bow, a grapevine:
Row-camping gear test

Later on I made S trade seats with me as an experiment.

Row-camping gear test

In the bow seat he could row away without triggering as much commentary from me about various aspects of rowing technique. Probably for the best!

Based on the ferocity of the wind, and the fact the forecast indicated it would continue until at least 5 pm, I decided I'd had enough of fighting the conditions and would just aim for home after Troy, instead of trying to fight further north up through the lock and towards Peebles Island.

Besides, that meant we could actually enjoy the wind as it pushed us back to Albany. We hardly even had to do any rowing at all!

Here's the boat back at home, with all the stowed gear:
Row-camping gear test

All told, I learned a lot from the trip. Stowing the gear wasn't that complicated by itself, but I do think I should get a couple more proper drybags for everything, since it does seem I can basically guarantee there will always be some water in the bottom of the boat. Stowing the kayak dolly on the stern deck wasn't too bad, either. When we brought the boat back up to the yard, however, we did learn that the kayak dolly needs to be minded, or it can wind up slipping out from under the boat (or in this instance, getting flipped upside-down).

I do still think I need to get a good folding cane seat for a passenger, too.

I think now I'll generally be satisfied with just daytrips in Petrichor for the rest of this year. I already have plenty of camping experience, so I'm now feeling fairly well-prepared for the RowCamping adventure I have planned for next summer.


*He has a lot of work tasks and homework to attend to, so was prudent enough to only commit to a day trip.
denise: Image: Me, facing away from camera, on top of the Castel Sant'Angelo in Rome (Default)
[staff profile] denise posting in [site community profile] dw_maintenance
It's been a while since we've done a full code push rather than just hotfixes for bugs, so we are well overdue! Depending on availability, we're aiming to do one sometime soon; we'll let you know specifics once we've worked out good timing for everyone who needs to be available.

However! The reason it's been so long is we kept trying to get some of the stuff that's pending to "really finished" instead of just "mostly finished", and then we once again looked around and went "oh no, this is a really big code push with a lot of changes". Those make us nervous, because while we do a lot of testing ourselves, y'all are really creative in how you use the site and we inevitably find a bunch of edge cases when we let you loose on new code with your real-world data!

So, if folks have some spare time in the next few days, it would be a huge help if you could spend half an hour or so using the site the same way you normally do but with the "Site-Wide Canary" beta features flag turned on. Canary mode is a sort of "live testing" mode: it's your real data, but running the most up-to-date code.

Canary mode always does have a few glitches -- there may be missing text strings or errors about missing database properties, which is a limitation of how we run it. We don't need to know about those, but anything else weird that you run into, leave a comment with what you were trying to do and the error message you got.

I'll repeat that the "here be dragons" caution that's on the beta features page: some things may be broken, so don't use it for when you're doing something important. But a few more eyeballs on it before the push will help the push go more smoothly for everyone.

For folks who want to concentrate on what's changing, we haven't finished the second code tour of what's going to be in this push, but the ffirst one has a good chunk of what's going to be going live. (We'll get the second half done ASAP!)
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I suppose it's at least progress to notice that trying to get myself to work on manuscripts triggers an itch to work on tangible projects and get various other things sorted out.

I *did* make some actual progress on two of the current manuscripts yesterday, yay. One is a project on seed harvester ant queens that I worked on with a graduate student and some undergrads back in the summer of 2021. The grad student (now a postdoc) and I have a standing weekly meeting to help ensure we make slow but relentless forward motion on the paper. Right now I am mostly refining the Introduction and Methods, but I do also need to review the Results again so we can then start working on drafting the Discussion.

The other manuscript is an unpublished dissertation chapter where I just can't stop collecting more data. That's a project where over the past year I've had a whole team of undergraduates help me to weigh and measure the head widths of thousands of leafcutter ants. We made good progress overall, but there are still ~15 colonies to finish up out of the 80 or so. Slow but steady progress, but perhaps it's some small consolation that it's a project that doesn't require too much thinking at the moment?

Anyway, brains working the way that they do, I have to allow for some daydreaming in the midst of attempting to write. Hence the travel planning and whatnot. But the daydreaming was also motivation to get the next oars sanded and primed, and to think about actually working on a solar-powered bike parts chandelier I want to make, and about getting back to work on various sewing projects, too. Soon.

But then I missed rowing practice this morning because allergies really got me down, so instead I finally got the soaker hose set up on the garden. This was becoming a rather urgent project, because the strawberry plants are all showing signs of wanting to produce a rather sizeable strawberry crop, but if the plants aren't well-hydrated the berries will be tiny and disappointing.

See what I mean?
Strawberry bonanza on the horizon

So, soaker hose deployed!

I also planted a bunch of marigold seeds in among the chaos of the driveway garden:
Driveway bed

This isn't the best photo of the driveway garden, but this year S dug out one of the burning bushes and replaced it with Brandi Glanville, the apricot tree that tried to kill me earlier this spring. He also added a strawberry plant, and I added a newer Dark Dahlia, which is already putting out lovely blooms. The hosta in the lower left of the photo and the rhubarb in the center were planted previously, and the back end of the bed has been taken over by some sort of lily. So, lots of random things going on in this garden bed, which is totally fine and fun.

Anyway, it's nice to have a part of the yard be experimental. The driveway bed could definitely use a bunch of soil amendment, though. It's just compacted clay right now, as a result of years of neglect.

Martha would have liked to help me, but she was forced to remain inside the catio, much to her dismay.
Martha watches me garden

George also would have liked to help me, but he requires direct supervision on the catio, so since he was not permitted out he instead decided to inspect our freezer magnet Scrabble game.

George helps us play Freezer Scrabble

Ironing out the details [travel]

May. 27th, 2026 03:39 pm
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As expected, travel is eating my brain these days.

I got train tickets booked for traveling to/from Frankfurt out to Freiburg(Breisgau), where the international social insect meeting will be taking place in August. Now the main remaining piece is to figure out where to stay overnight in Frankfurt; most likely I'll default to a youth hostel there. I'm really hoping to manage with just carry-on luggage for that trip, which will be a squeeze but seems possible.

I also ordered a few bits and bobs for Princess TinyBike, in the event that the Princess winds up being the vehicle of choice for biking up to Montreal with [personal profile] annikusrex in June. That will all partly depend on whether or not a wheelbuilder in New Hampshire can finish building a new front wheel for the Princess. When I tried riding PTB in April, the generator hub was stiff and made such terrible squealing noises that I hopped off and walked. I'd thought the hub was a Schmidt hub, and sent it off to a bike shop for warrantee replacement, but learned I was mistaken. The new hub *will* be a Schmidt hub; the hubs on Frodo and Froinlavin have held up far better than the one on PTB.

There are two potential conveniences of AKW riding PTB: she has ridden PTB before and knows how the bike handles already, and since PTB is a folding bike we have fewer question marks about the logistics of getting a bicycle back to Albany from Montreal (so far there's no information from Amtrak to indicate the possibility of boxing a bike for the return trip, so we have to assume we might have to find a bike shop to ship the bikes).

I just contacted some key people in Arizona to let them know I'll be in Tucson in August. It's going to be interesting to see how expensive that trip gets, with what's happening with gasoline prices.

And I just bought plane tickets for a weekend expedition out to Chicago in September to row a half-marathon with some of my rowing teammates.

Bike commuting keeps me in good practice with folding myself up and transporting myself somewhere else, I suppose.
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This past weekend, our team went to the Pittsford Regatta on the Erie Canal just outside Rochester. It's a favorite regatta, which is a little funny because just a few years back it was hard to convince my masters teammates to participate, and now we have a big crew that goes. This year the regatta weather didn't fully cooperate; when we arrived it was warmish, then it started to sprinkle, the sprinkle turned to rain and blowing wind, and temperatures dropped through the day. It has been a while since I've had such a rainy regatta experience, and I've definitely forgotten how to manage myself in the midst of it all. Being out in the elements all day is different from being out in the elements for just a rowing practice. Overall our spirits weren't too dampened; boats had decent races and we didn't have any serious misadventures (this time!).

I've started to think of my singles races as "scouting" opportunities.

lots of photos in this post... )
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In the summer of 2024, when I first drove across the country, I stopped in Moab to visit a cousin of mine - well, technically a first cousin, once removed (her mom was my cousin). It was a short visit, but a good and powerful one; she's on my dad's side of the family and we're close in age, so we had a lot of ground to cover in talking about the deaths of my dad and her mom. As a parting gift, she gave me a copy of a book called The Myth of Normal: Trauma, Illness, and Healing in a Toxic Culture, by Gabor Maté and Daniel Maté.

Things about the book, before discussing its contents: the book is physically large, which made it cumbersome to read, especially factoring in cats that want to snuggle and get head scritches while I read.

The book's appearance had me a little nervous about woo-woo new-age pop psychology, so I put off reading it until after finishing a couple other books. But accepting the book was a promise to read it, so.

Actually reading it: my overall assessment as a person who reads a decent amount of nonfiction, is that the name-dropping and the use of the royal "we" were irritating. If the book had been heavily edited (I suspect the authors are the type to resist efforts to heavily edit), it might have been more impactful. I say this but meanwhile the book declares itself a NYT bestseller, and there have been occasions where I have appreciated NYT nonfiction bestsellers, so I wouldn't completely throw out the book, I'll just give it the side-eye. And other people might find it interesting and helpful for its central thesis about how profoundly macro- and micro-traumas can shape human behavior and health.

The challenge I have with books of this sort is that they do contain some useful ideas and information, the gems are just buried in a bunch of other words. And life is short.

In any case, I have finished reading it, and it was fine, so I can say as much to my cousin someday.

In the meantime, I have a bit of fiction I might read next. But also, for the sustainability teaching workshop last week, we were given a couple of reading assignments that convinced me to add at least one of the two entire (nonfiction) books to my List of Books to Read. Both books were published in 2024, although my sustainability colleague tells me that's somewhat coincidental; they are both more updated versions of the discourse within sustainability that has developed over the past decade or so*.

In any case, the two books are:
Not the End of the World: How We Can Be the First Generation to Build a Sustainable Planet, by Hannah Ritchie

and
What If We Get It Right? Visions of Climate Futures, by Ayana Elizabeth Johnson (bought the ebook for this one).

The excerpts we read both make the point that Doomerism is unproductive (and in some cases counterproductive), and that people need to think about and do things other than stew in their climate or other anxieties. The works then did set us up well in the workshop for productive learning and discussion about what sustainability is and how we can work to incorporate sustainability competencies into our courses. I needed to hear all this, because in General Biology I teach about the sixth mass extinction, global climate change broadly writ, and ocean acidification, and in teaching about these things I do feel compelled to do more than just declare the state of emergency.

I do hope to write more specifically about more aspects of the workshop, but this is at least a starting point for doing so. The workshop was multifaceted and covered a LOT of ground in 2 days, both literally and metaphorically, so I have a lot to unpack for myself and I might not do all of that unpacking here on my blog.

But meanwhile, in the back of my mind, I just keep thinking, "Just say NO to Doomerism and Boomerism!!!!" heh.




*For me a big goal of the workshop was to gain an updated understanding of the contemporary discourse in sustainability; definitely do not assume that you are up-to-date in the field unless you are currently going to conferences and interacting with experts in this field, because a lot of what happens in this arena is very much misrepresented in popular media, and that's one of the points made by both books.
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It has been quite the weekend, to the point where today will likely largely be devoted to just trying to remember who I am, where I am, what I'm doing. I mean, yes, I have some sense of things, but I also have a big photo backlog from the past week, and need to sit down and rewrite my to-do lists.

Yesterday featured some of those moments of, "Do I sit down and think and write about things, or do I just get up and DO some of the particular things on the to-do list?"

I went with doing the things, most particularly getting the dahlias planted, but also tackling the next set of oar repairs and sanding, and tending to the most urgent laundry items. (so much laundry. too much laundry. but better than moldy clothes.)

Ultimately, though, I'm "working" from home today, so today will be a mix of thinking and doing. Sooner or later I need to get the soaker hose installed, and there are also several herbs that need to be repotted. It is another rather rainy day, however, so I might put off the soaker hose work until later in the week.

And now that I'm clear of the week of faculty development workshops, maybe I can finally structure and prioritize progress on research? Maybe?
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